Arachis data collections

Arachis hypogaea

Genomes

Tifrunner.gnm1.KYV3
Genome assembly 1 for Arachis hypogaea, cultivar Tifrunner
Tifrunner.gnm2.J5K5
Genome assembly 2 for Arachis hypogaea, cultivar Tifrunner. This version has structural changes relative to assembly 1.
BaileyII.gnm1.1JTF
Arachis hypogaea accession Bailey II, genome assembly 1
Fuhuasheng.gnm1.XX5Y
Genome assembly for tetraploid peanut cultivar Fuhuasheng, from Chen et al., 2019
Shitouqi.gnm1.L4VP
Genome assembly for peanut cultivar Shitouqui, from Zhuang et al., 2019.

Annotations

BaileyII.gnm1.ann1.PQM7
Annotation 1 for Arachis hypogaea accession Bailey II, genome assembly 1
Tifrunner.gnm2.ann1.4K0L
Gene models for genome assembly 2 for Arachis hypogaea, cultivar Tifrunner.
Tifrunner.gnm1.ann1.CCJH
Arachis hypogaea accession Tifrunner annotation files from genome assembly 1.0
Tifrunner.gnm2.ann2.PVFB
Annotation 2, using the BIND pipeline, for Arachis hypogaea, cultivar Tifrunner

Expression

Tifrunner.gnm2.ann2.expr.Tifrunner.Clevenger_2016
A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea

Markers

Tifrunner.gnm1.mrk.Axiom_Arachis2
Axiom_Arachis2 is a SNP marker set developed by Clevenger, et al. DOI:10.1016/j.molp.2016.11.015
Tifrunner.gnm1.mrk.Agarwal_Clevenger_2018
Genetic map of Tifrunner x GT-C20 for the study of early and late leaf spots (ELS and LLS) and tomato spotted wilt virus (TSWV).
Tifrunner.gnm1.mrk.Axiom_Arachis_58K
Axiom_Arachis_58K is a high-density SNP array with 58,233 SNPs reduced from 163,782 SNPs derived from DNA resequencing and RNA-sequencing of 41 groundnut accessions and wild diploid ancestors.

Diversity

aradu1_araip1.gnm1.div.Otyama_Kulkarni_2020
Diversity data for the U.S. peanut core collection, genotyped relative to the diploid A. duranensis and A. ipaensis genome assemblies.
aradu1_araip1.gnm1.div.Otyama_Wilkey_2019
Genotype data for US Peanut Mini Core collection.
aradu1_araip1.gnm1.div.Clevenger_Korani_2018
Genotyping of African germplasm collection

Arachis duranensis

Genomes

V14167.gnm2.J7QH
Genome assembly 2 for Arachis duranensis, accession V14167
V14167.gnm1.SWBf
Genome assembly 1 for Arachis duranensis, accession V14167
K30060.gnm1.W9B1
Genome assembly 1 for Arachis duranensis, accession K30060
K30065.gnm1.M24N
Genome assembly 1 for Arachis duranensis, accession K30065, collected from rio seco Bolivia

Annotations

V14167.gnm1.ann1.cxSM
genome annotations

Markers

V14167.gnm1.mrk.Li_Cui_2022
Markers from the Affymetrix version 2.0 SNP array mapped to the Arachis duranensis V14167 v1.0 assembly.

Synteny

V14167.gnm1.syn.qmkW
Synteny mappings among the genomes. See genome assemblies indicated in the synteny comparisons.

Arachis ipaensis

Genomes

K30076.gnm1.bXJ8
Genome assembly 1 for Arachis ipaensis, accession K30076.
K30076.gnm2.1GWY
Genome Assembly 2 for A. ipaensis K30076. A high-quality chromosome-scale assembly, based on PacBio RSII and Sequel reads, ordered into pseudomolecules by Dovetail using Hi-C Chicago libraries and the HiRise and SNAP.

Annotations

K30076.gnm1.ann1.J37m
genome annotations for Arachis ipaensis K30076.gnm1.ann1

Markers

K30076.gnm1.mrk.Li_Cui_2022
Markers from the Affymetrix version 2.0 SNP array mapped to the Arachis ipaensis K30076 v1.0 assembly.

Synteny

K30076.gnm1.syn.S8s4
Synteny mappings among the genomes. See genome assemblies indicated in the synteny comparisons.

Arachis cardenasii

Genomes

K10017.gnm1.DQ4M
Genome assembly 1 for Arachis cardenasii, accession K10017

Arachis stenosperma

Genomes

V10309.gnm1.PFL2
Genome assembly 1 for Arachis stenosperma, genotype V10309

Annotations

V10309.gnm1.ann1.CZRZ
GenBank RefSeq annotation for Genome assembly 1 for Arachis stenosperma, genotype V10309

Genomes | Transcriptomes | QTL | Repeats | Maps

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Transcriptomes


Trait data

peanut traits defined by PeanutBase:, Use and development of formal ontologies are essential. We are working with other legume communities to create a consistent trait terminology, using specialized terms for peanut where necessary. This will enable PeanutBase to integrate with trait information for multiple legume species available at LegumeInfo.org(link is external) and other plant genetic databases. Peanut QTL data are collected from published resources; we then apply our standard trait terminology and definitions before presentation on the site. We have made the evolving trait terminology available for download as an excel spreadsheet.

BurowStarr2014.xls:, The QTL dataset associated with 'Burow, Star et al., 2014a'.
CavalcanteMoretzsohn2014.xls:, The QTL dataset associated with 'Cavalcante, Moretzsohn et al., 2014a'.