About PeanutBase

PeanutBase integrates genetic and genomic information across many Arachis species including cultivated peanut. Access this information by selecting a genus under TAXA, or a tool or method under TOOLS, or select DOWNLOAD(DataStore) via the Data Store. You can also explore most of the data via the rich toolsets at ArachisMine (also accessed throughout this website).

Taxa - Resources for legumes at various taxonomic levels (species, genera, and the family as a whole): data sets, genome browsers, pan-gene sets, synteny visualizations, sequence and keyword search, etc.

Tools - Pan-legume tools: sequence and keyword search, gene families and phylogenies, synteny visualization, etc. search, etc.

Download(DataStore) - Browse and download data sets from the LIS Data Store.

Cite PeanutBase and the peanut genomes

  • Cite PeanutBase
    Sudhansu Dash, Ethalinda K.S. Cannon, Scott R. Kalberer, Andrew D. Farmer and Steven B. Cannon. PeanutBase and Other Bioinformatic Resources for Peanut ( Chapter 8). In Peanuts Genetics, Process ing, and Utilization, edited by H. Thomas Stalker and Richard F. Wilson, AOCS Press, 2016, Pages 241-252. (ISBN 978163067 0382, doi:10.1016/B978-1-63067-038-2.00008-3).
  • Cite peanut genome
    David J. Bertioli, Jerry Jenkins, Josh Clevenger, Olga Dudchenko, Dongying Gao, Guillermo Seijo, Soraya C. M. Leal-Bertioli, Long hui Ren, Andrew D. Farmer, Manish K. Pandey, Sergio S. Samoluk, Brian Abernathy, Gaurav Agarwal, Carolina Ballén-Taborda, Connor Cameron, Jacqueline Campbell, Carolina Chavarro, Annapurna Chitikineni, Ye Chu, Sudhansu Dash, Moaine El Baidouri, Baozhu Guo, We i Huang, Kyung Do Kim, Walid Korani, Sophie Lanciano, Christopher G. Lui, Marie Mirouze, Márcio C. Moretzsohn, Melanie Pham, Jin Hee Shin, Kenta Shirasawa, Senjuti Sinharoy, Avinash Sreedasyam, Nathan T. Weeks, Xinyou Zhang, Zheng Zheng, Ziqi Sun, Lutz Froen icke, Erez L. Aiden, Richard Michelmore, Rajeev K. Varshney, C. Corley Holbrook, Ethalinda K. S. Cannon, Brian E. Scheffler, Jane Grimwood, Peggy Ozias-Akins, Steven B. Cannon, Scott A. Jackson & Jeremy Schmutz. The genome sequence of segmental allotetraploi d peanut Arachis hypogaea. Nature Genetics 51, 877–884 (2019).

    Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shir asawa K, Huang W, Vidigal B, Abernathy B, Chu Y, Niederhuth CE, Umale P, Araújo AC, Kozik A, Do Kim K, Burow MD, Varshney RK, Wan g X, Zhang X, Barkley N, Guimarães PM, Isobe S, Guo B, Liao B, Stalker HT, Schmitz RJ, Scheffler BE, Leal-Bertioli SC, Xun X, Jac kson SA, Michelmore R, Ozias-Akins P. The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of c ultivated peanut. Nature Genetics 48:438–446 (2016). doi: 10.1038/ng.3517. PubMed PMID: 26901068 .    

Funding and Development

PaeanutBase is funded by The Peanut Research Foundation (TPRF) and in kind support from LIS at (NCGR and USDA-ARS). It is developed and hosted by the National Center for Genome Resources (NCGR) and the USDA-ARS Legume Clade Database group at Ames, IA.