Changes between the Arachis hypogaea var. Tifrunner genome assemblies version 1 and version 2.

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On July 26th, 2019 an improved version of the Arachis hypogaea cv Tifrunner genome was released. Corrections to the A. hypogaea var. Tifrunner genome assembly were made by DNA Zoo, on the basis of Hi-C data produced by the Aiden lab. See also this DNA Zoo announcement

Downloads:
Arachis hypogaea var. Tifrunner version 1 pseudomolecules
Arachis hypogaea var. Tifrunner version 1 gene models
Arachis hypogaea var. Tifrunner version 2 pseudomolecules
Arachis hypogaea var. Tifrunner version 2 gene models

A summary of the changes:
Arahy.01: NO CHANGES
Arahy.02: Translocation of an 8 Mbp chunk within the pericentromere; swap a bit of the proximal end with Arahy.12
Arahy.03: Rearrangements of much of the pericentromere; swap a large portion of the distal end with Arahy.13
Arahy.04: NO CHANGES
Arahy.05: Swap a bit of the distal end with Arahy.15
Arahy.06: Swap a large portion of the distal end with Arahy.16
Arahy.07: Swap a bit of the proximal end with Arahy.17
Arahy.08: Removal of a small scaffold from distal end
Arahy.09: Inversion of a large centromeric chunk
Arahy.10: no visible changes
Arahy.11: no visible changes
Arahy.12: no visible changes
Arahy.13: Swap a large portion of the distal end with Arahy.03
Arahy.14: NO CHANGES
Arahy.15: Inversion of a large centromeric chunk
Arahy.16: Swap a large portion of the distal end with Arahy.06
Arahy.17: Swap a bit of the proximal end with Arahy.07
Arahy.18: no visible changes
Arahy.19: Addition of a small (700 kb) scaffold to proximal end
Arahy.20: Addition of a small (1 Mb) scaffold to distal end


Images of changes by chromosome:
(Produced by MUMmer)
Arahy.01 | Arahy.02 | Arahy.03 | Arahy.04 | Arahy.05 | Arahy.06 | Arahy.07 | Arahy.08 | Arahy.09 | Arahy.10 Arahy.11 | Arahy.12 | Arahy.13 | Arahy.14 | Arahy.15 | Arahy.16 | Arahy.17 | Arahy.18 | Arahy.19 | Arahy.20

Pseudomolecule Arahy.01 x Arahy.01 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.02 x Arahy.02 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.03 (X-axis=gnm1, Y-axis=gnm2)

Pseudomolecule Arahy.03 x Arahy.13 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.04 x Arahy.04 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.05 x Arahy.05 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.06 x Arahy.06 (X-axis=gnm1, Y-axis=gnm2)

Pseudomolecule Arahy.06 x Arahy.16 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.07 x Arahy.07 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.08 x Arahy.08 (X-axis=gnm1, Y-axis=gnm2)

Pseudomolecule Arahy.08 x Arahy.02 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.09 x Arahy.09 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.10 x Arahy.10 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.11 x Arahy.11 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.12 x Arahy.12 (X-axis=gnm1, Y-axis=gnm2)

Pseudomolecule Arahy.12 x Arahy.05 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.13 x Arahy.13 (X-axis=gnm1, Y-axis=gnm2)

Pseudomolecule Arahy.13 x Arahy.03 (X-axis=gnm1, Y-axis=gnm2)

Pseudomolecule Arahy.13 x Arahy.20 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.14 x Arahy.14 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.15 x Arahy.15 (X-axis=gnm1, Y-axis=gnm2)

Pseudomolecule Arahy.15 x Arahy.19 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.16 x Arahy.16 (X-axis=gnm1, Y-axis=gnm2)

Pseudomolecule Arahy.16 x Arahy.06 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.17 x Arahy.17 (X-axis=gnm1, Y-axis=gnm2)

Pseudomolecule Arahy.17 x Arahy.07 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.18 x Arahy.18 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.19 x Arahy.19 (X-axis=gnm1, Y-axis=gnm2)

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Pseudomolecule Arahy.20 x Arahy.20 (X-axis=gnm1, Y-axis=gnm2)

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